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Sample GSM1159703 Query DataSets for GSM1159703
Status Public on Apr 01, 2014
Title Female_hs-KO 10
Sample type RNA
 
Source name Mouse liver tissue
Organism Mus musculus
Characteristics gender: female
genotype: hs-RXRa-Dex4-/-
tissue: liver
age: 2 months
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation using corresponding functions in the R package lumi.
 
Submission date Jun 10, 2013
Last update date Apr 01, 2014
Contact name deqiang sun
E-mail(s) dsun@tamu.edu
Phone (713) 677-7439
Organization name Texas A&M University
Street address 2121 W Holcombe Blvd
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL6887
Series (2)
GSE47791 Genome-wide analysis of liver gene expression in male and female mice.
GSE47899 Genome-wide analysis of liver in male and female mice

Data table header descriptions
ID_REF
VALUE quantile normalized
24_658_F_detpvalue

Data table
ID_REF VALUE 24_658_F_detpvalue
ILMN_1212602 -5.799169 0.7232906
ILMN_1212603 2.845178 0.3301282
ILMN_1212605 841.406 0
ILMN_1212607 74.84911 0
ILMN_1212612 18.71192 0.03418804
ILMN_1212614 -5.865674 0.7254273
ILMN_1212619 -8.031137 0.8205128
ILMN_1212623 -6.179008 0.7393162
ILMN_1212625 376.0508 0
ILMN_1212626 110.381 0
ILMN_1212628 -8.751204 0.849359
ILMN_1212632 20.68689 0.02777778
ILMN_1212633 89.32254 0
ILMN_1212636 1363.339 0
ILMN_1212637 4381.061 0
ILMN_1212638 11547.22 0
ILMN_1212639 26.9837 0.01495726
ILMN_1212644 -0.1562236 0.4455128
ILMN_1212645 3473.775 0
ILMN_1212646 294.3365 0

Total number of rows: 45281

Table truncated, full table size 1339 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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