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Sample GSM1154009 Query DataSets for GSM1154009
Status Public on Dec 31, 2014
Title IMSC#3, 21 days adipocyte differentiation, replicate 3
Sample type RNA
Source name Immortalized human bone marrow-derived mesenchymal stromal cell line IMSC#3, 21 days adipocyte differentiation, replicate 3
Organism Homo sapiens
Characteristics cell line: IMSC#3
sample origin: Human bone marrow-derived mesenchymal stromal cell
gender: Male
Growth protocol Cells were seeded in 48- and 6-well plates (Nunc) at 25,000 and 100,000 cells per well, respectively. Next day, the medium was replaced with adipocyte induction medium containing 1 µM Dexamethasone (Decadron), 0.5 mM iso-butyl-methyl-xanthine and 50 µM Indomethacine (both from Sigma-Aldrich). The differentiation medium was replaced twice a week for 21 days.
Extracted molecule total RNA
Extraction protocol RNA was isolated using the standard TRIzol procedure (Invitrogen), and further purified with an RNeasy mini column (Qiagen GmbH, Hilden, Germany), according to the manufacturers’ instructions.
Label Biotin
Label protocol Biotinylated cRNA was prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data was quantile normalisation in GeneSpring GX10 (Agilent)
Submission date Jun 05, 2013
Last update date Dec 31, 2014
Contact name Leonardo A. Meza-Zepeda
Phone +47-99035706
Organization name Oslo University Hospital
Department Department of Tumor Biology
Lab Meza-Zepeda
Street address Ullernchausseen 70
City Oslo
ZIP/Postal code 0310
Country Norway
Platform ID GPL6884
Series (2)
GSE47647 Generation and Characterization of an immortalized human mesenchymal stromal cell line model [Illumina adipocyte differentiation]
GSE47651 Generation and Characterization of an immortalized human mesenchymal stromal cell line model

Data table header descriptions
VALUE Quantile normalised intensities in GeneSpring GX10 (Agielnt)
21d-3_A.Detection Pval

Data table
ID_REF VALUE 21d-3_A.Detection Pval
ILMN_1343291 225576.9294 0.0000
ILMN_1343295 29259.9767 0.0000
ILMN_1651199 304.0615 0.2319
ILMN_1651209 311.3080 0.1621
ILMN_1651210 275.4648 0.6667
ILMN_1651221 319.2936 0.1238
ILMN_1651228 10753.4651 0.0000
ILMN_1651229 1037.4406 0.0013
ILMN_1651230 287.6776 0.4848
ILMN_1651232 406.0172 0.0171
ILMN_1651235 370.3658 0.0224
ILMN_1651236 307.1928 0.2003
ILMN_1651237 360.3445 0.0303
ILMN_1651238 290.7904 0.4506
ILMN_1651249 299.0573 0.3123
ILMN_1651253 267.3534 0.8155
ILMN_1651254 5611.7888 0.0000
ILMN_1651259 353.7953 0.0343
ILMN_1651260 276.4881 0.6574
ILMN_1651262 25092.0548 0.0000

Total number of rows: 48803

Table truncated, full table size 1391 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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