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Sample GSM1146636 Query DataSets for GSM1146636
Status Public on May 23, 2013
Title tumoral sample 103
Sample type RNA
Source name sample of human liver from resection and transplantation
Organism Homo sapiens
Characteristics patient id: #49
tissue: liver
tissue subtype: tumoral
Extracted molecule total RNA
Extraction protocol liver from human biospies and transplantation
Total RNA was extracted using Mirvana extraction kit following manufacturer protocol
Label Cy3
Label protocol labelling protocol was agilent protocol 'G4140-90050_GeneExpression_Two_Color_v6.5-mai 2010' and the labelling was pseudo mono color (1/2 of the sample with Cy3 and 1/2 of the sample with Cy5)
Hybridization protocol Oligoarray control targets and hybridization buffer (Agilent In Situ Hybridization Kit Plus) were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequential
Scan protocol Scanner Agilent G2565CA Feature extraction 10.7
Description T_103_10293_1_2
raw data file: US82400123_253949410293_S01_GE2_107_Sep09_1_2.txt
Data processing Feature extraction 10.7 with protocol GE_107_sep09 and grid 039494_G2_D_F_20120628. Both positive and negative control probes were excluded from data normalization and data was filtered by the average of the median of the samples (79.1490322580645). The features which at least 50% of the samples have values above the cut were included (resulting in 28,782 data rows in the sample data table).
Submission date May 22, 2013
Last update date Apr 23, 2018
Contact name Boris HALGAND
Organization name INSERM
Street address 1, rue Gaston Veil
City Nantes
ZIP/Postal code 44000
Country France
Platform ID GPL16699
Series (1)
GSE47197 Human liver infected by HBV: tumoral part vs non tumoral part of the liver
Reanalyzed by GSE113533

Data table header descriptions
VALUE normalized by LOWESS method

Data table
22881 -0.358320
14953 -0.347813
54719 0.033000
31656 0.094847
56021 0.338797
26764 -0.369061
36925 -0.183454
12501 -0.022639
54903 0.341978
30906 -0.066212
3011 -0.095993
62818 0.595642
27086 0.218458
12508 -1.407783
30742 -0.503675
27092 -0.908993
25934 -1.060074
2027 -0.161149
27257 -0.554422
61 -0.272368

Total number of rows: 28782

Table truncated, full table size 430 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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