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Sample GSM1146194 Query DataSets for GSM1146194
Status Public on Jan 21, 2014
Title Epi_Cast_Vehicle_rep2
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2 treated with vehicle for 3 days
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
8650489001_B.Detection Pval

Data table
ID_REF VALUE 8650489001_B.Detection Pval
ILMN_2417611 -4.9 0.83974
ILMN_2762289 3.3 0.19658
ILMN_2896528 3641.4 0.00000
ILMN_2721178 771.2 0.00000
ILMN_2458837 -2.2 0.62821
ILMN_3033922 2201.6 0.00000
ILMN_3092673 7261.4 0.00000
ILMN_1230777 5570.6 0.00000
ILMN_1246069 1224.3 0.00000
ILMN_1232042 -4.7 0.82692
ILMN_1243193 1265.9 0.00000
ILMN_2524361 2.0 0.28739
ILMN_1242440 4.1 0.16239
ILMN_1233188 222.4 0.00000
ILMN_2543688 2035.0 0.00000
ILMN_1259789 27.8 0.00107
ILMN_2816356 17.3 0.00748
ILMN_1224596 34.2 0.00000
ILMN_1233643 5.2 0.13355
ILMN_2808939 882.8 0.00000

Total number of rows: 45281

Table truncated, full table size 1150 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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