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Sample GSM1146193 Query DataSets for GSM1146193
Status Public on Jan 21, 2014
Title Epi_Cast_Vehicle_rep1
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: caput epididymis
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1 treated with vehicle for 3 days
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
8650489001_A.Detection Pval

Data table
ID_REF VALUE 8650489001_A.Detection Pval
ILMN_2417611 -5.4 0.86859
ILMN_2762289 -2.9 0.68162
ILMN_2896528 3565.2 0.00000
ILMN_2721178 593.9 0.00000
ILMN_2458837 -4.6 0.82265
ILMN_3033922 1857.8 0.00000
ILMN_3092673 7751.0 0.00000
ILMN_1230777 5006.5 0.00000
ILMN_1246069 1400.7 0.00000
ILMN_1232042 -3.5 0.72115
ILMN_1243193 1070.6 0.00000
ILMN_2524361 1.9 0.26816
ILMN_1242440 0.7 0.36325
ILMN_1233188 427.3 0.00000
ILMN_2543688 3370.6 0.00000
ILMN_1259789 25.5 0.00000
ILMN_2816356 15.0 0.00748
ILMN_1224596 40.4 0.00000
ILMN_1233643 3.7 0.15598
ILMN_2808939 1015.6 0.00000

Total number of rows: 45281

Table truncated, full table size 1150 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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