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Sample GSM1146192 Query DataSets for GSM1146192
Status Public on Jan 21, 2014
Title Kid_Cast_Testo_rep3
Sample type RNA
 
Source name adult male
Organism Mus musculus
Characteristics tissue: kidney
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3 treated with Testo for 3 days
5922012019_F
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
 
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
E-mail(s) olli.janne@helsinki.fi
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
 
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
ID_REF
VALUE quantile normalized
5922012019_F.Detection Pval

Data table
ID_REF VALUE 5922012019_F.Detection Pval
ILMN_2417611 1225.0 0.00000
ILMN_2762289 -1.9 0.52457
ILMN_2896528 4421.9 0.00000
ILMN_2721178 1413.1 0.00000
ILMN_2458837 79.3 0.00000
ILMN_3033922 2574.4 0.00000
ILMN_3092673 7830.3 0.00000
ILMN_1230777 6246.8 0.00000
ILMN_1246069 4974.1 0.00000
ILMN_1232042 -18.8 0.99359
ILMN_1243193 1432.0 0.00000
ILMN_2524361 -0.4 0.44872
ILMN_1242440 7.1 0.24573
ILMN_1233188 278.3 0.00000
ILMN_2543688 2771.4 0.00000
ILMN_1259789 23.5 0.06197
ILMN_2816356 10.2 0.18376
ILMN_1224596 21.8 0.07051
ILMN_1233643 12.6 0.15385
ILMN_2808939 1144.9 0.00000

Total number of rows: 45281

Table truncated, full table size 1160 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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