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Sample GSM1146189 Query DataSets for GSM1146189
Status Public on Jan 21, 2014
Title Kid_Cast_Vehicle_rep3
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: kidney
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3 treated with vehicle for 3 days
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
5922012009_E.Detection Pval

Data table
ID_REF VALUE 5922012009_E.Detection Pval
ILMN_2417611 1364.6 0.00000
ILMN_2762289 -2.1 0.54274
ILMN_2896528 4575.4 0.00000
ILMN_2721178 1500.2 0.00000
ILMN_2458837 12.3 0.14850
ILMN_3033922 2440.2 0.00000
ILMN_3092673 7018.0 0.00000
ILMN_1230777 5425.9 0.00000
ILMN_1246069 5555.7 0.00000
ILMN_1232042 -6.5 0.72329
ILMN_1243193 689.0 0.00000
ILMN_2524361 2.0 0.38782
ILMN_1242440 -2.4 0.55769
ILMN_1233188 329.9 0.00000
ILMN_2543688 2922.4 0.00000
ILMN_1259789 11.0 0.16880
ILMN_2816356 3.8 0.33761
ILMN_1224596 11.0 0.16667
ILMN_1233643 0.5 0.44017
ILMN_2808939 956.2 0.00000

Total number of rows: 45281

Table truncated, full table size 1160 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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