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Sample GSM1146184 Query DataSets for GSM1146184
Status Public on Jan 21, 2014
Title Pro_Cast_Testo_rep1
Sample type RNA
 
Source name adult male
Organism Mus musculus
Characteristics tissue: prostate
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1 treated with Testo for 3 days
5922012019_B
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
 
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
E-mail(s) olli.janne@helsinki.fi
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
 
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
ID_REF
VALUE quantile normalized
5922012019_B.Detection Pval

Data table
ID_REF VALUE 5922012019_B.Detection Pval
ILMN_2417611 -8.7 0.80449
ILMN_2762289 -10.9 0.88889
ILMN_2896528 3390.3 0.00000
ILMN_2721178 829.2 0.00000
ILMN_2458837 -5.3 0.65385
ILMN_3033922 969.6 0.00000
ILMN_3092673 3935.9 0.00000
ILMN_1230777 3097.4 0.00000
ILMN_1246069 1853.9 0.00000
ILMN_1232042 -7.4 0.75427
ILMN_1243193 2202.1 0.00000
ILMN_2524361 -10.2 0.86538
ILMN_1242440 -0.6 0.43056
ILMN_1233188 223.3 0.00000
ILMN_2543688 3504.1 0.00000
ILMN_1259789 25.0 0.01923
ILMN_2816356 25.1 0.01923
ILMN_1224596 43.2 0.00214
ILMN_1233643 0.9 0.36752
ILMN_2808939 704.2 0.00000

Total number of rows: 45281

Table truncated, full table size 1160 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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