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Sample GSM1146183 Query DataSets for GSM1146183
Status Public on Jan 21, 2014
Title Pro_Cast_Vehicle_rep3
Sample type RNA
Source name adult male
Organism Mus musculus
Characteristics tissue: prostate
Treatment protocol Tissues were harvested from adult castrated male mice after 3 days testosterone- or vehicle-treatment.
Growth protocol Mice were housed in standard 12-h light-dark cycle and were fed ad libitum.
Extracted molecule total RNA
Extraction protocol RNA was extracted with QIAGEN RNeasy mini kit with DNaseI treatment in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3 treated with vehicle for 3 days
Data processing The data were normalised using quantile normalisation with BeadStudio Program from Illumina.
Submission date May 22, 2013
Last update date Jan 21, 2014
Contact name Olli A. Jänne
Phone +358919125040
Organization name University of Helsinki
Department Inst. of Biomedicine/Physiology
Lab Androgen Receptor Laboratory
Street address Haartmaninkatu-8
City Helsinki
ZIP/Postal code FI-00014
Country Finland
Platform ID GPL6887
Series (2)
GSE47181 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs. [microarray]
GSE47194 Tissue-specific pioneer factors associate with androgen receptor cistromes and transcription programs

Data table header descriptions
VALUE quantile normalized
5922012009_B.Detection Pval

Data table
ID_REF VALUE 5922012009_B.Detection Pval
ILMN_2417611 -6.7 0.69658
ILMN_2762289 1.8 0.32265
ILMN_2896528 4381.4 0.00000
ILMN_2721178 1043.3 0.00000
ILMN_2458837 -5.2 0.61538
ILMN_3033922 1204.8 0.00000
ILMN_3092673 5298.2 0.00000
ILMN_1230777 4358.0 0.00000
ILMN_1246069 2720.5 0.00000
ILMN_1232042 -13.5 0.94338
ILMN_1243193 2082.2 0.00000
ILMN_2524361 -9.7 0.83013
ILMN_1242440 -4.8 0.60150
ILMN_1233188 161.2 0.00000
ILMN_2543688 2028.9 0.00000
ILMN_1259789 13.3 0.08333
ILMN_2816356 11.6 0.10363
ILMN_1224596 32.2 0.00534
ILMN_1233643 6.0 0.18590
ILMN_2808939 385.3 0.00000

Total number of rows: 45281

Table truncated, full table size 1160 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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