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Sample GSM1144506 Query DataSets for GSM1144506
Status Public on Jun 04, 2013
Title Primary tumour region 8 RMH8
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 8
subject: RMH8
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
RMH8-R8_logR

Data table
ID_REF VALUE RMH8-R8_logR
CN_473963 NULL 0.204417585805438
CN_473964 NULL 0.161853997742121
CN_473965 NULL 0.174677089723181
CN_477984 NULL 0.473421131526382
CN_473981 NULL -0.0387109395284355
CN_473982 NULL 0.188189486513227
CN_497980 NULL 0.0870981145217615
CN_497981 NULL 0.130719250116341
CN_513369 NULL 0.41788431545013
CN_513370 NULL 0.196719328488548
CN_517762 NULL 0.338808733971692
CN_517763 NULL 0.0573501953779371
CN_502615 NULL 0.492707178268136
CN_502613 NULL -0.398322227907991
CN_502614 NULL 0.394283708708112
CN_502616 NULL 0.243347350082951
CN_502842 NULL 0.127284874954691
CN_502843 NULL 0.354620440485363
CN_466171 NULL 0.710109600250605
CN_466172 NULL 0.0507457375482968

Total number of rows: 1782073

Table truncated, full table size 73810 Kbytes.




Supplementary file Size Download File type/resource
GSM1144506_RMH8-R8.CEL.gz 26.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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