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Sample GSM1144500 Query DataSets for GSM1144500
Status Public on Jun 04, 2013
Title Primary tumour region 2 RMH8
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: RMH8
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.217680041228931
CN_473964 NULL -0.00732507341719809
CN_473965 NULL 0.146360494398985
CN_477984 NULL 0.110159423197533
CN_473981 NULL 0.0010805519909052
CN_473982 NULL 0.00929831024654362
CN_497980 NULL 0.354952134515504
CN_497981 NULL 0.195876101281849
CN_513369 NULL 0.257005483892115
CN_513370 NULL 0.062414620681784
CN_517762 NULL 0.507235552818717
CN_517763 NULL -0.134327337655673
CN_502615 NULL 0.546663817414844
CN_502613 NULL -0.0621621712089242
CN_502614 NULL 0.585776028641283
CN_502616 NULL 0.436995173926264
CN_502842 NULL 0.141138463962148
CN_502843 NULL 0.237459649351425
CN_466171 NULL 0.404808165891915
CN_466172 NULL -0.272200253985542

Total number of rows: 1782073

Table truncated, full table size 73539 Kbytes.

Supplementary file Size Download File type/resource
GSM1144500_RMH8-R2.CEL.gz 26.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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