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Sample GSM1144499 Query DataSets for GSM1144499
Status Public on Jun 04, 2013
Title Primary tumour region 1 RMH8
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 1
subject: RMH8
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.129611701495837
CN_473964 NULL -0.137585415232199
CN_473965 NULL -0.0624821488591016
CN_477984 NULL -0.19000878768055
CN_473981 NULL -0.0135727825323157
CN_473982 NULL -0.0409589489428277
CN_497980 NULL 0.257927135013476
CN_497981 NULL 0.123846487935278
CN_513369 NULL 0.528438559715928
CN_513370 NULL -0.142373071638057
CN_517762 NULL 0.179242890248329
CN_517763 NULL -0.443919292532093
CN_502615 NULL 0.731744621663118
CN_502613 NULL -0.273032725408733
CN_502614 NULL 0.202590042986628
CN_502616 NULL 0.270971378401975
CN_502842 NULL 0.0938034622180254
CN_502843 NULL 0.0300516624510412
CN_466171 NULL 0.183308563817107
CN_466172 NULL -0.00858485558066218

Total number of rows: 1782073

Table truncated, full table size 73867 Kbytes.

Supplementary file Size Download File type/resource
GSM1144499_RMH8-R1.CEL.gz 27.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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