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Sample GSM1144498 Query DataSets for GSM1144498
Status Public on Jun 04, 2013
Title Normal blood RMH8
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: blood
subject: RMH8
disease state: normal
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description blood
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.143546700903549
CN_473964 NULL -0.11454005245919
CN_473965 NULL -0.00899457376216873
CN_477984 NULL 0.00619609919961334
CN_473981 NULL 0.336646842282194
CN_473982 NULL -0.0242754193652128
CN_497980 NULL 0.129310627105644
CN_497981 NULL -0.0692672330137817
CN_513369 NULL 0.506691731721177
CN_513370 NULL -0.0658887586017128
CN_517762 NULL 0.195638848422507
CN_517763 NULL -0.520440280749464
CN_502615 NULL 0.798729015490459
CN_502613 NULL -0.137989644720013
CN_502614 NULL 0.283738663769993
CN_502616 NULL 0.131226402255943
CN_502842 NULL 0.199458418407891
CN_502843 NULL -0.00617943376923361
CN_466171 NULL 0.0963690040844527
CN_466172 NULL 0.0838763977767638

Total number of rows: 1782073

Table truncated, full table size 73848 Kbytes.

Supplementary file Size Download File type/resource
GSM1144498_RMH8-N.CEL.gz 27.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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