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Sample GSM1144497 Query DataSets for GSM1144497
Status Public on Jun 04, 2013
Title Primary tumour region 10 RMH3
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 10
subject: RMH3
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 8
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0289545614407054
CN_473964 NULL -0.0997252718322233
CN_473965 NULL 0.17836433025885
CN_477984 NULL -0.0951564445549664
CN_473981 NULL 0.760376867518432
CN_473982 NULL -0.102185649753835
CN_497980 NULL 0.362842247719629
CN_497981 NULL -0.140990277079603
CN_513369 NULL 0.505518904821426
CN_513370 NULL -0.0834829550114683
CN_517762 NULL 0.300468134756454
CN_517763 NULL -0.372877668209421
CN_502615 NULL 0.694832645064732
CN_502613 NULL -0.233243048585459
CN_502614 NULL 0.641125951711965
CN_502616 NULL 0.921371573505455
CN_502842 NULL 0.176782118530043
CN_502843 NULL -0.129982195831866
CN_466171 NULL 0.191470280711248
CN_466172 NULL -0.150300431822955

Total number of rows: 1782073

Table truncated, full table size 73789 Kbytes.

Supplementary file Size Download File type/resource
GSM1144497_RMH3-R10.CEL.gz 27.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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