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Sample GSM1144493 Query DataSets for GSM1144493
Status Public on Jun 04, 2013
Title Primary tumour region 3 RMH3
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: RMH3
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.128826689127185
CN_473964 NULL 0.222104117185301
CN_473965 NULL 0.260382509382244
CN_477984 NULL 0.128918143194137
CN_473981 NULL 0.644239767214511
CN_473982 NULL 0.421925103483495
CN_497980 NULL 0.150018925715319
CN_497981 NULL -0.25028800916424
CN_513369 NULL 0.367724370454658
CN_513370 NULL 0.214394869931494
CN_517762 NULL 0.554501648884688
CN_517763 NULL -0.512350924048321
CN_502615 NULL 0.588177079354006
CN_502613 NULL -0.144754949064827
CN_502614 NULL 0.654125104259894
CN_502616 NULL 0.531322617499244
CN_502842 NULL 0.127366843676458
CN_502843 NULL 0.00830380421371739
CN_466171 NULL -0.153317582226096
CN_466172 NULL -0.100539480829226

Total number of rows: 1782073

Table truncated, full table size 73777 Kbytes.

Supplementary file Size Download File type/resource
GSM1144493_RMH3-R3.CEL.gz 27.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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