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Sample GSM1144492 Query DataSets for GSM1144492
Status Public on Jun 04, 2013
Title Primary tumour region 2 RMH3
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: RMH3
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.594702132667874
CN_473964 NULL 0.0193494042811483
CN_473965 NULL 0.0605584438745659
CN_477984 NULL 0.137288030001837
CN_473981 NULL 0.446408377239386
CN_473982 NULL -0.0904149589576715
CN_497980 NULL 0.036350164568193
CN_497981 NULL -0.366127320688474
CN_513369 NULL 0.436445426383675
CN_513370 NULL -0.00514352808187079
CN_517762 NULL 0.302334700707723
CN_517763 NULL -0.0922314929070324
CN_502615 NULL 1.09750256281844
CN_502613 NULL -0.444990470254368
CN_502614 NULL 0.546637493273759
CN_502616 NULL 0.424623325741949
CN_502842 NULL 0.331030801226958
CN_502843 NULL -0.0747245689797031
CN_466171 NULL 0.00957015116650258
CN_466172 NULL -0.206303311151363

Total number of rows: 1782073

Table truncated, full table size 73806 Kbytes.

Supplementary file Size Download File type/resource
GSM1144492_RMH3-R2.CEL.gz 26.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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