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Sample GSM1144491 Query DataSets for GSM1144491
Status Public on Jun 04, 2013
Title Primary tumour region 1 RMH3
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 1
subject: RMH3
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.204826651073844
CN_473964 NULL 0.0527951412110209
CN_473965 NULL 0.27475164089818
CN_477984 NULL -0.178965526424084
CN_473981 NULL 0.923437037679707
CN_473982 NULL -0.0259738328112786
CN_497980 NULL -0.0264815985953812
CN_497981 NULL -0.106883251723144
CN_513369 NULL 0.45151149338555
CN_513370 NULL -0.0170699447233497
CN_517762 NULL 0.267294707975195
CN_517763 NULL -0.159517386575415
CN_502615 NULL 1.09969338862916
CN_502613 NULL -0.0477344345293729
CN_502614 NULL 0.46336639264754
CN_502616 NULL 0.518924265672917
CN_502842 NULL 0.445827994418759
CN_502843 NULL -0.278435424890978
CN_466171 NULL 0.221297705067914
CN_466172 NULL -0.0616516903356031

Total number of rows: 1782073

Table truncated, full table size 73923 Kbytes.

Supplementary file Size Download File type/resource
GSM1144491_RMH3-R1.CEL.gz 26.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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