GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144490 Query DataSets for GSM1144490
Status Public on Jun 04, 2013
Title Normal blood RMH3
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: blood
subject: RMH3
disease state: normal
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description blood
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.417761774756475
CN_473964 NULL -0.0261409761224508
CN_473965 NULL 0.0573999236559942
CN_477984 NULL -0.107386876365042
CN_473981 NULL 0.74133590189227
CN_473982 NULL 0.155409038676988
CN_497980 NULL 0.308081852241793
CN_497981 NULL 0.162814847019598
CN_513369 NULL 0.516565155285035
CN_513370 NULL 0.221976163276061
CN_517762 NULL 0.190608883211459
CN_517763 NULL -0.24052571013891
CN_502615 NULL 0.839464375014582
CN_502613 NULL -0.357899089498033
CN_502614 NULL 0.634171919147843
CN_502616 NULL 0.662104239383363
CN_502842 NULL 0.261246980563759
CN_502843 NULL -0.0831930532244249
CN_466171 NULL 0.0331539378176014
CN_466172 NULL -0.0993225990051335

Total number of rows: 1782073

Table truncated, full table size 73844 Kbytes.

Supplementary file Size Download File type/resource
GSM1144490_RMH3-N.CEL.gz 27.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap