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Sample GSM1144489 Query DataSets for GSM1144489
Status Public on Jun 04, 2013
Title Primary tumour region 13 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 13
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.43786966546465
CN_473964 NULL -0.0956448862471271
CN_473965 NULL -0.0164343692205483
CN_477984 NULL 0.0236248682776339
CN_473981 NULL 0.607891293878695
CN_473982 NULL -0.123541789267341
CN_497980 NULL 0.0161785151725939
CN_497981 NULL -0.301150662406494
CN_513369 NULL -0.322302328148387
CN_513370 NULL 0.295735028949109
CN_517762 NULL 0.275165751180483
CN_517763 NULL -0.0529763246068021
CN_502615 NULL 0.42189116219131
CN_502613 NULL -0.377073797269552
CN_502614 NULL 0.172141105734643
CN_502616 NULL -0.0853583688446787
CN_502842 NULL 0.151144053327551
CN_502843 NULL 0.000560886625938042
CN_466171 NULL 0.226468053050493
CN_466172 NULL -0.13930005810167

Total number of rows: 1782073

Table truncated, full table size 73838 Kbytes.

Supplementary file Size Download File type/resource
GSM1144489_RK29-R13.CEL.gz 27.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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