GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144488 Query DataSets for GSM1144488
Status Public on Jun 04, 2013
Title Primary tumour region 12 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 12
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.0688810604269669
CN_473964 NULL -0.450946796791418
CN_473965 NULL -0.0310637304419243
CN_477984 NULL 0.0822926625732859
CN_473981 NULL 0.532094408924564
CN_473982 NULL 0.144716115352409
CN_497980 NULL 0.313357665914643
CN_497981 NULL 0.00689405964295473
CN_513369 NULL 0.0219198094934898
CN_513370 NULL 0.00254722080722642
CN_517762 NULL 0.245361962181706
CN_517763 NULL -0.402154498169255
CN_502615 NULL 0.567670209549152
CN_502613 NULL -0.191124882540476
CN_502614 NULL 0.581711728853212
CN_502616 NULL 0.422377543512239
CN_502842 NULL 0.407164533732996
CN_502843 NULL 0.28089649273162
CN_466171 NULL 0.200340241024065
CN_466172 NULL 0.0391756831868063

Total number of rows: 1782073

Table truncated, full table size 73828 Kbytes.

Supplementary file Size Download File type/resource
GSM1144488_RK29-R12.CEL.gz 28.4 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap