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Sample GSM1144487 Query DataSets for GSM1144487
Status Public on Jun 04, 2013
Title Primary tumour region 11 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 11
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 7
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.205959460010776
CN_473964 NULL -0.10429629536738
CN_473965 NULL -0.162709701323225
CN_477984 NULL -0.290823499832125
CN_473981 NULL 0.342913166464671
CN_473982 NULL 0.0974718279516094
CN_497980 NULL -0.012122641448999
CN_497981 NULL -0.0997432761309144
CN_513369 NULL -0.286307904551815
CN_513370 NULL 0.20398418974506
CN_517762 NULL 0.383205568750653
CN_517763 NULL -0.180105150526611
CN_502615 NULL 0.109569087107431
CN_502613 NULL -0.10134304787984
CN_502614 NULL 0.187583196338522
CN_502616 NULL 0.228713678247493
CN_502842 NULL 0.166082601871759
CN_502843 NULL 0.357020142785829
CN_466171 NULL -0.0206492107625591
CN_466172 NULL -0.284525301549899

Total number of rows: 1782073

Table truncated, full table size 73957 Kbytes.

Supplementary file Size Download File type/resource
GSM1144487_RK29-R11.CEL.gz 28.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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