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Sample GSM1144482 Query DataSets for GSM1144482
Status Public on Jun 04, 2013
Title Primary tumour region 6 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 6
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.178001360649644
CN_473964 NULL -0.332438742331758
CN_473965 NULL -0.186220655575232
CN_477984 NULL 0.0717812978004023
CN_473981 NULL 0.294476641153999
CN_473982 NULL 0.0525499753467036
CN_497980 NULL 0.0775747754081317
CN_497981 NULL -0.0863649520055081
CN_513369 NULL -0.719250859922713
CN_513370 NULL 0.282142333792557
CN_517762 NULL 0.37594794119577
CN_517763 NULL -0.246543599596161
CN_502615 NULL -0.0619813909483281
CN_502613 NULL -0.14258729393242
CN_502614 NULL 0.301908096868415
CN_502616 NULL 0.121601344969498
CN_502842 NULL 0.172016256291664
CN_502843 NULL 0.177470395359516
CN_466171 NULL 0.112856097671178
CN_466172 NULL -0.218826472309608

Total number of rows: 1782073

Table truncated, full table size 73949 Kbytes.

Supplementary file Size Download File type/resource
GSM1144482_RK29-R6.CEL.gz 27.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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