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Sample GSM1144480 Query DataSets for GSM1144480
Status Public on Jun 04, 2013
Title Primary tumour region 4 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 4
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 4
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.366456866183145
CN_473964 NULL -0.0891874102115769
CN_473965 NULL -0.113163209063941
CN_477984 NULL -0.193435050965893
CN_473981 NULL 0.476693423675754
CN_473982 NULL 0.169691391871385
CN_497980 NULL -0.0819056481478259
CN_497981 NULL -0.188975262892149
CN_513369 NULL -0.301285852023
CN_513370 NULL 0.177560358471353
CN_517762 NULL 0.273320082815755
CN_517763 NULL -0.366842368618763
CN_502615 NULL 0.617576517913476
CN_502613 NULL -0.199170191075641
CN_502614 NULL 0.165564500477195
CN_502616 NULL 0.258790993747657
CN_502842 NULL 0.0204939026849527
CN_502843 NULL 0.0983184301763519
CN_466171 NULL 0.114039837927213
CN_466172 NULL -0.459663964044604

Total number of rows: 1782073

Table truncated, full table size 73945 Kbytes.

Supplementary file Size Download File type/resource
GSM1144480_RK29-R4.CEL.gz 27.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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