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Sample GSM1144479 Query DataSets for GSM1144479
Status Public on Jun 04, 2013
Title Primary tumour region 3 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0201700767050745
CN_473964 NULL -0.150043549205373
CN_473965 NULL 0.0946494303287847
CN_477984 NULL -0.378330290790692
CN_473981 NULL -0.121820325949825
CN_473982 NULL 0.0150568320298885
CN_497980 NULL -0.0327284742056859
CN_497981 NULL -0.384954938259875
CN_513369 NULL -0.636457928802921
CN_513370 NULL 0.0409401620434217
CN_517762 NULL 0.0795552123423939
CN_517763 NULL -0.468129636554482
CN_502615 NULL 0.541083419119199
CN_502613 NULL -0.268712706189656
CN_502614 NULL 0.0710701313211083
CN_502616 NULL 0.32178817991797
CN_502842 NULL 0.275227629538436
CN_502843 NULL 0.142287831491218
CN_466171 NULL 0.206123660567284
CN_466172 NULL -0.127385411390352

Total number of rows: 1782073

Table truncated, full table size 74012 Kbytes.

Supplementary file Size Download File type/resource
GSM1144479_RK29-R3.CEL.gz 26.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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