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Sample GSM1144478 Query DataSets for GSM1144478
Status Public on Jun 04, 2013
Title Primary tumour region 2 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.035168324578663
CN_473964 NULL -0.154472595709007
CN_473965 NULL -0.0638759654082142
CN_477984 NULL -0.410664934139188
CN_473981 NULL 0.177682464388887
CN_473982 NULL -0.207990500245735
CN_497980 NULL 0.0476623234473344
CN_497981 NULL -0.35147455415181
CN_513369 NULL -0.450554050098286
CN_513370 NULL -0.0800828514783526
CN_517762 NULL -0.0561968724024438
CN_517763 NULL -0.608631898887658
CN_502615 NULL 0.824195013062842
CN_502613 NULL -0.519542327846465
CN_502614 NULL -0.235375463058063
CN_502616 NULL -0.188630596175267
CN_502842 NULL -0.0772769832346415
CN_502843 NULL -0.364766982151687
CN_466171 NULL 0.0342671761975262
CN_466172 NULL -0.0822707307248691

Total number of rows: 1782073

Table truncated, full table size 74111 Kbytes.

Supplementary file Size Download File type/resource
GSM1144478_RK29-R2.CEL.gz 27.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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