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Sample GSM1144477 Query DataSets for GSM1144477
Status Public on Jun 04, 2013
Title Primary tumour region 1 RK29
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 1
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.0999849475080632
CN_473964 NULL -0.344506555644744
CN_473965 NULL -0.174806152029634
CN_477984 NULL -0.13530785707699
CN_473981 NULL 0.324106430288085
CN_473982 NULL -0.174356689012507
CN_497980 NULL -0.0918987101041651
CN_497981 NULL -0.221699070465436
CN_513369 NULL -0.37728120462178
CN_513370 NULL 0.19458418994399
CN_517762 NULL 0.170622286408138
CN_517763 NULL -0.0110626650584541
CN_502615 NULL 0.824522494320531
CN_502613 NULL -0.42048878086302
CN_502614 NULL -0.0400932573091202
CN_502616 NULL 0.101027427768504
CN_502842 NULL 0.0326989956074596
CN_502843 NULL -0.136922272729473
CN_466171 NULL 0.098436147939784
CN_466172 NULL -0.134342165372947

Total number of rows: 1782073

Table truncated, full table size 73983 Kbytes.

Supplementary file Size Download File type/resource
GSM1144477_RK29-R1.CEL.gz 26.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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