|
| Status |
Public on Jun 04, 2013 |
| Title |
Primary tumour region 1 RK29 |
| Sample type |
genomic |
| |
|
| Source name |
kidney
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: Primary tumour
tissue section: region 1
subject: RK29
disease state: clear cell Renal Cell Carinoma
batch: 3
|
| Treatment protocol |
Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Fresh frozen
|
| Label |
biotin
|
| Label protocol |
standard Affymetrix protocol
|
| |
|
| Hybridization protocol |
standard Affymetrix protocol
|
| Scan protocol |
standard Affymetrix protocol
|
| Description |
clear cell Renal Cell Carinoma, region 1
|
| Data processing |
B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
|
| |
|
| Submission date |
May 18, 2013 |
| Last update date |
Jun 05, 2013 |
| Contact name |
Pierre Martinez |
| Organization name |
Cancer Research Centre of Lyon
|
| Street address |
28 rue Laennec
|
| City |
Lyon cedex 08 |
| ZIP/Postal code |
69373 |
| Country |
France |
| |
|
| Platform ID |
GPL6801 |
| Series (1) |
| GSE47077 |
Multi-region copy-number analysis |
|
