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Sample GSM1144473 Query DataSets for GSM1144473
Status Public on Jun 04, 2013
Title Primary tumour region 2 RK23
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: RK23
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
RK23-R2_logR

Data table
ID_REF VALUE RK23-R2_logR
CN_473963 NULL -0.130868404613476
CN_473964 NULL -0.442690263173847
CN_473965 NULL -0.417304734927801
CN_477984 NULL 0.242661209080992
CN_473981 NULL -0.163959986848682
CN_473982 NULL -0.124592974755564
CN_497980 NULL 0.125913996623337
CN_497981 NULL -0.147390599794595
CN_513369 NULL -0.00525934225351841
CN_513370 NULL -0.08427632122231
CN_517762 NULL 0.23765038117563
CN_517763 NULL -0.266204030378217
CN_502615 NULL 1.01244231340763
CN_502613 NULL -0.226037471151734
CN_502614 NULL -0.561595183857945
CN_502616 NULL -1.30730167456994
CN_502842 NULL 0.0140460303984611
CN_502843 NULL -0.0921896521135673
CN_466171 NULL 0.0035935697578817
CN_466172 NULL 0.0146538154959862

Total number of rows: 1782073

Table truncated, full table size 73706 Kbytes.




Supplementary file Size Download File type/resource
GSM1144473_RK23-R2.CEL.gz 28.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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