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Sample GSM1144472 Query DataSets for GSM1144472
Status Public on Jun 04, 2013
Title Primary tumour region 1 RK23
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 1
subject: RK23
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.0842550213278258
CN_473964 NULL -0.337259814660188
CN_473965 NULL 0.00676824523255456
CN_477984 NULL 0.137228854182755
CN_473981 NULL -0.728996270565634
CN_473982 NULL -0.201037230554702
CN_497980 NULL -0.0318051587099178
CN_497981 NULL 0.224575118770503
CN_513369 NULL -0.24017056232671
CN_513370 NULL -0.307889506962599
CN_517762 NULL -0.584556760843859
CN_517763 NULL -0.222823481255035
CN_502615 NULL 0.729228773562488
CN_502613 NULL -0.560182880329106
CN_502614 NULL -0.891984289133371
CN_502616 NULL -2.9354302939207
CN_502842 NULL 0.0761431378541036
CN_502843 NULL -0.122369797904529
CN_466171 NULL 0.0465333725513146
CN_466172 NULL 0.0488370457697014

Total number of rows: 1782073

Table truncated, full table size 73998 Kbytes.

Supplementary file Size Download File type/resource
GSM1144472_RK23-R1.CEL.gz 27.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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