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Sample GSM1144470 Query DataSets for GSM1144470
Status Public on Jun 04, 2013
Title Primary tumour region 5 RK21
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 5
subject: RK21
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.144902661538117
CN_473964 NULL -0.125593803399009
CN_473965 NULL 0.0511597329293748
CN_477984 NULL -0.0989374384999612
CN_473981 NULL -0.331987727430178
CN_473982 NULL -0.297981762908968
CN_497980 NULL 0.0936365067224132
CN_497981 NULL 0.226618078284676
CN_513369 NULL -0.256970812226135
CN_513370 NULL -0.0918441670472075
CN_517762 NULL -0.0688815585360451
CN_517763 NULL 0.0104365978520843
CN_502615 NULL 0.754187100237656
CN_502613 NULL -0.341979070547134
CN_502614 NULL 0.188908040902886
CN_502616 NULL -0.365240796379164
CN_502842 NULL -0.0958462731836028
CN_502843 NULL -0.147447343798759
CN_466171 NULL -0.0607021052733024
CN_466172 NULL -0.102322230619468

Total number of rows: 1782073

Table truncated, full table size 73985 Kbytes.

Supplementary file Size Download File type/resource
GSM1144470_RK21-R5.CEL.gz 26.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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