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Sample GSM1144469 Query DataSets for GSM1144469
Status Public on Jun 04, 2013
Title Primary tumour region 4 RK21
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 4
subject: RK21
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 4
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
RK21-R4_logR

Data table
ID_REF VALUE RK21-R4_logR
CN_473963 NULL 0.053077635078835
CN_473964 NULL -0.271549985777592
CN_473965 NULL -0.0431691804430851
CN_477984 NULL -0.210820109837917
CN_473981 NULL -0.197453129166115
CN_473982 NULL 0.112789457574055
CN_497980 NULL 0.119605262305278
CN_497981 NULL 0.180244665997721
CN_513369 NULL -0.17843225782494
CN_513370 NULL -0.121634425139168
CN_517762 NULL -0.274121789794729
CN_517763 NULL 0.274253811356056
CN_502615 NULL 0.506809296822078
CN_502613 NULL -0.349218255314854
CN_502614 NULL 0.318894052280802
CN_502616 NULL -0.15015065340336
CN_502842 NULL 0.0776538214306141
CN_502843 NULL 0.11465821362083
CN_466171 NULL -0.00121135226427696
CN_466172 NULL -0.0962969712823302

Total number of rows: 1782073

Table truncated, full table size 73940 Kbytes.




Supplementary file Size Download File type/resource
GSM1144469_RK21-R4.CEL.gz 27.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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