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Sample GSM1144467 Query DataSets for GSM1144467
Status Public on Jun 04, 2013
Title Primary tumour region 2 RK21
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: RK21
disease state: clear cell Renal Cell Carinoma
batch: 3
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
RK21-R2_logR

Data table
ID_REF VALUE RK21-R2_logR
CN_473963 NULL -0.0517701830729142
CN_473964 NULL -0.234747899141334
CN_473965 NULL -0.192299782227714
CN_477984 NULL -0.0377589521471999
CN_473981 NULL 0.0147318215382205
CN_473982 NULL 0.094415848582132
CN_497980 NULL 0.406427769543079
CN_497981 NULL 0.211677587267901
CN_513369 NULL 0.106606888024265
CN_513370 NULL -0.0620386965508743
CN_517762 NULL -0.168606313507393
CN_517763 NULL -0.205260128533918
CN_502615 NULL 0.523641118493116
CN_502613 NULL -0.144707632116459
CN_502614 NULL 0.584211771347646
CN_502616 NULL -0.11372144037401
CN_502842 NULL 0.326669183520257
CN_502843 NULL -0.0460979051433095
CN_466171 NULL 0.210705673726673
CN_466172 NULL 0.0371245290144512

Total number of rows: 1782073

Table truncated, full table size 73846 Kbytes.




Supplementary file Size Download File type/resource
GSM1144467_RK21-R2.CEL.gz 28.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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