GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144462 Query DataSets for GSM1144462
Status Public on Jun 04, 2013
Title Primary tumour region 7 P7
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 7
subject: P7
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 1
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.467620415137488
CN_473964 NULL -0.019880235075353
CN_473965 NULL 0.0175609299357269
CN_477984 NULL 0.2320660773948
CN_473981 NULL -0.475486136576487
CN_473982 NULL -0.302876423076241
CN_497980 NULL 0.492140835708369
CN_497981 NULL 0.37853201639168
CN_513369 NULL 0.255634720413157
CN_513370 NULL 0.00349526551005567
CN_517762 NULL -0.101229342982141
CN_517763 NULL -0.208916546578252
CN_502615 NULL 0.42363253634045
CN_502613 NULL 0.0149231165083912
CN_502614 NULL 0.474760445897784
CN_502616 NULL 0.643513932316984
CN_502842 NULL -0.0843225201047135
CN_502843 NULL 0.361068518631666
CN_466171 NULL -0.275932632508088
CN_466172 NULL -0.585889644140106

Total number of rows: 1782073

Table truncated, full table size 74099 Kbytes.

Supplementary file Size Download File type/resource
GSM1144462_P7-R7.CEL.gz 28.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap