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Sample GSM1144460 Query DataSets for GSM1144460
Status Public on Jun 04, 2013
Title Primary tumour region 5 P7
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 5
subject: P7
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 5
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
P7-R5_logR

Data table
ID_REF VALUE P7-R5_logR
CN_473963 NULL 0.229517461059742
CN_473964 NULL -0.182927988541871
CN_473965 NULL -0.458418302260783
CN_477984 NULL -0.0803341977467107
CN_473981 NULL 0.0146185196502021
CN_473982 NULL -0.704749542080837
CN_497980 NULL 0.141801830528748
CN_497981 NULL 0.295624127679312
CN_513369 NULL 0.199000841596764
CN_513370 NULL 0.00527776908118719
CN_517762 NULL -0.204554647306088
CN_517763 NULL -0.447484390249142
CN_502615 NULL 0.227952594471026
CN_502613 NULL 0.0538241610786276
CN_502614 NULL 0.712506644334807
CN_502616 NULL 0.501286855600734
CN_502842 NULL -0.158813512509979
CN_502843 NULL -0.224139669067316
CN_466171 NULL -0.563691814304601
CN_466172 NULL -0.568936773736057

Total number of rows: 1782073

Table truncated, full table size 74174 Kbytes.




Supplementary file Size Download File type/resource
GSM1144460_P7-R5.CEL.gz 28.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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