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Sample GSM1144459 Query DataSets for GSM1144459
Status Public on Jun 04, 2013
Title Primary tumour region 3 P7
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: P7
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0660512507681129
CN_473964 NULL 0.0512422928897137
CN_473965 NULL -0.125773926862895
CN_477984 NULL 0.487112411939968
CN_473981 NULL -0.195977094388611
CN_473982 NULL -0.419831158335978
CN_497980 NULL 0.479135391536112
CN_497981 NULL 0.254406559555474
CN_513369 NULL 0.808147528418068
CN_513370 NULL -0.465508313128286
CN_517762 NULL 0.00163462457539433
CN_517763 NULL -0.0473102366867944
CN_502615 NULL 0.692948759182814
CN_502613 NULL 0.131795120251344
CN_502614 NULL 0.55487965297548
CN_502616 NULL 1.07773874196923
CN_502842 NULL -0.0293952624521108
CN_502843 NULL -0.441495585882127
CN_466171 NULL 0.427982726002413
CN_466172 NULL -0.242202833883032

Total number of rows: 1782073

Table truncated, full table size 74058 Kbytes.

Supplementary file Size Download File type/resource
GSM1144459_P7-R3.CEL.gz 27.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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