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Sample GSM1144458 Query DataSets for GSM1144458
Status Public on Jun 04, 2013
Title Primary tumour region 2 P7
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: P7
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.231313154034678
CN_473964 NULL -0.357916286397042
CN_473965 NULL -0.422000767708591
CN_477984 NULL 0.132195672791086
CN_473981 NULL -0.0303864336471917
CN_473982 NULL -0.155617954662514
CN_497980 NULL 0.521270149202731
CN_497981 NULL 0.486169821706766
CN_513369 NULL 0.852727439527794
CN_513370 NULL -0.0178327441975197
CN_517762 NULL -0.346432619925349
CN_517763 NULL -0.245869378494222
CN_502615 NULL 0.558304661833037
CN_502613 NULL 0.0622647270025635
CN_502614 NULL 0.936398908795823
CN_502616 NULL 0.386325707019718
CN_502842 NULL 0.483669106690344
CN_502843 NULL 0.446650755049878
CN_466171 NULL 0.612324319759958
CN_466172 NULL -0.632752968291993

Total number of rows: 1782073

Table truncated, full table size 74121 Kbytes.

Supplementary file Size Download File type/resource
GSM1144458_P7-R2.CEL.gz 29.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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