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Sample GSM1144457 Query DataSets for GSM1144457
Status Public on Jun 04, 2013
Title Normal kidney P7
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Normal kidney
subject: P7
disease state: normal
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description normal adult kidney
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.0892871683441571
CN_473964 NULL 0.0136431455250447
CN_473965 NULL -0.135139619409658
CN_477984 NULL 0.067474639395953
CN_473981 NULL -0.321549027085581
CN_473982 NULL -0.108884929074375
CN_497980 NULL 0.43486599848456
CN_497981 NULL 0.124300196318109
CN_513369 NULL 0.405692805856891
CN_513370 NULL -0.119582337655338
CN_517762 NULL 0.316621531942438
CN_517763 NULL -0.203073310309988
CN_502615 NULL 0.738928395217988
CN_502613 NULL 0.16026870510181
CN_502614 NULL 0.0695637638039212
CN_502616 NULL 0.835847058090757
CN_502842 NULL 0.166136409677525
CN_502843 NULL -0.0617110203218818
CN_466171 NULL -0.0964364010701796
CN_466172 NULL -0.232880932337488

Total number of rows: 1782073

Table truncated, full table size 74057 Kbytes.

Supplementary file Size Download File type/resource
GSM1144457_P7-N.CEL.gz 27.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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