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Sample GSM1144451 Query DataSets for GSM1144451
Status Public on Jun 04, 2013
Title Primary tumour region 8 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 8
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.242466507790922
CN_473964 NULL -0.142441403977429
CN_473965 NULL 0.0693033278265438
CN_477984 NULL -0.244731915806265
CN_473981 NULL -0.682183546438911
CN_473982 NULL -0.287274023410557
CN_497980 NULL -0.415766725695687
CN_497981 NULL 0.407383045490336
CN_513369 NULL -0.958416441349597
CN_513370 NULL -0.195328437432371
CN_517762 NULL -0.878374738055527
CN_517763 NULL -0.19775161423391
CN_502615 NULL 0.25550364258699
CN_502613 NULL -0.0158938546483336
CN_502614 NULL -1.03278932625762
CN_502616 NULL -1.61715710761781
CN_502842 NULL -0.266784584333191
CN_502843 NULL -0.276439078449682
CN_466171 NULL -0.273228769269198
CN_466172 NULL -0.741508590341648

Total number of rows: 1782073

Table truncated, full table size 74073 Kbytes.

Supplementary file Size Download File type/resource
GSM1144451_P6-R8.CEL.gz 27.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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