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Sample GSM1144450 Query DataSets for GSM1144450
Status Public on Jun 04, 2013
Title Primary tumour region 6 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 6
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.129509895183896
CN_473964 NULL -0.172382540048618
CN_473965 NULL -0.328849370867301
CN_477984 NULL 0.356312112733142
CN_473981 NULL -0.590334586580257
CN_473982 NULL -0.0357847418217989
CN_497980 NULL 0.655179302767429
CN_497981 NULL 0.74395411847424
CN_513369 NULL -0.470079420943596
CN_513370 NULL -0.0500345801633837
CN_517762 NULL -1.28093025858035
CN_517763 NULL 0.051882114674532
CN_502615 NULL -0.0120191597017642
CN_502613 NULL 0.213025665853003
CN_502614 NULL -0.584907181433764
CN_502616 NULL -1.05331956173521
CN_502842 NULL 0.233178724694477
CN_502843 NULL 0.346937603309584
CN_466171 NULL 1.15053800349979
CN_466172 NULL -0.356438392813731

Total number of rows: 1782073

Table truncated, full table size 74016 Kbytes.

Supplementary file Size Download File type/resource
GSM1144450_P6-R6.CEL.gz 27.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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