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Sample GSM1144448 Query DataSets for GSM1144448
Status Public on Jun 04, 2013
Title Primary tumour region 4 P6
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 4
subject: P6
disease state: clear cell Renal Cell Carinoma
batch: 2
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 4
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.402959868544294
CN_473964 NULL -0.224525137433271
CN_473965 NULL 0.04970694603275
CN_477984 NULL -0.185553764290653
CN_473981 NULL -0.536621755082437
CN_473982 NULL -0.595037255663469
CN_497980 NULL 0.381481559700279
CN_497981 NULL 0.569268547781217
CN_513369 NULL -0.515212255038923
CN_513370 NULL -0.287073710694782
CN_517762 NULL -1.51722683570787
CN_517763 NULL -0.27430665980413
CN_502615 NULL 0.379230085366362
CN_502613 NULL 0.24185754516736
CN_502614 NULL -0.252210892348891
CN_502616 NULL -2.34378983372218
CN_502842 NULL -0.215282064160487
CN_502843 NULL 0.00225298116780807
CN_466171 NULL 0.21533969507515
CN_466172 NULL -0.260393210108418

Total number of rows: 1782073

Table truncated, full table size 74102 Kbytes.

Supplementary file Size Download File type/resource
GSM1144448_P6-R4.CEL.gz 28.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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