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Sample GSM1144442 Query DataSets for GSM1144442
Status Public on Jun 04, 2013
Title Primary tumour region 6 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 6
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.325536756077955
CN_473964 NULL -0.0694381389769963
CN_473965 NULL 0.00104966736197064
CN_477984 NULL -0.0481642048264929
CN_473981 NULL 0.36680040341838
CN_473982 NULL -0.0802145710150676
CN_497980 NULL 0.390356154715868
CN_497981 NULL -0.0666800840709357
CN_513369 NULL 0.00210131744917389
CN_513370 NULL -0.033339832856076
CN_517762 NULL 0.222563582906189
CN_517763 NULL -0.539210379138628
CN_502615 NULL 0.492192942447537
CN_502613 NULL -0.0351899122093502
CN_502614 NULL 0.0721514153061775
CN_502616 NULL 0.296959973174409
CN_502842 NULL 0.0213869685030042
CN_502843 NULL -0.260634003179366
CN_466171 NULL -0.0990479026590277
CN_466172 NULL -0.140177647473716

Total number of rows: 1782073

Table truncated, full table size 73790 Kbytes.

Supplementary file Size Download File type/resource
GSM1144442_P5-R6.CEL.gz 27.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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