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Sample GSM1144441 Query DataSets for GSM1144441
Status Public on Jun 04, 2013
Title Primary tumour region 5 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 5
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 6
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL -0.0247923944351143
CN_473964 NULL 0.0776782219235654
CN_473965 NULL 0.17725598151548
CN_477984 NULL -0.00391109815968449
CN_473981 NULL 0.121440447877977
CN_473982 NULL -0.0534680306478627
CN_497980 NULL 0.0591515574576438
CN_497981 NULL -0.106312181199005
CN_513369 NULL -0.90983355359396
CN_513370 NULL -0.178911843349521
CN_517762 NULL 0.0510362747011881
CN_517763 NULL -0.332195192047375
CN_502615 NULL 0.545651316466307
CN_502613 NULL -0.856858872669149
CN_502614 NULL -0.43975965712052
CN_502616 NULL 0.38047526054962
CN_502842 NULL -0.167491977143481
CN_502843 NULL -0.0274569866268332
CN_466171 NULL -0.00299198686742154
CN_466172 NULL -0.491763029635859

Total number of rows: 1782073

Table truncated, full table size 73820 Kbytes.

Supplementary file Size Download File type/resource
GSM1144441_P5-R5.CEL.gz 26.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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