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Sample GSM1144440 Query DataSets for GSM1144440
Status Public on Jun 04, 2013
Title Primary tumour region 4 P5
Sample type genomic
 
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 4
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 4
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
 
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
ID_REF
VALUE B Allele Frequencies
P5-R4_logR

Data table
ID_REF VALUE P5-R4_logR
CN_473963 NULL 0.278175918543487
CN_473964 NULL -0.026603001700011
CN_473965 NULL 0.0264222038253663
CN_477984 NULL 0.0218196835272297
CN_473981 NULL 0.263516347403599
CN_473982 NULL -0.12281155527456
CN_497980 NULL 0.0595043791289776
CN_497981 NULL 0.0536477616426611
CN_513369 NULL -0.0697993281424249
CN_513370 NULL 0.0810607766394301
CN_517762 NULL 0.150747216535518
CN_517763 NULL -0.202793124662083
CN_502615 NULL 0.684194144311181
CN_502613 NULL -0.553052635007378
CN_502614 NULL 0.162722555715781
CN_502616 NULL -0.116811128039731
CN_502842 NULL -0.106849105510363
CN_502843 NULL -0.13593639317079
CN_466171 NULL -0.0463516527194377
CN_466172 NULL -0.297663111469754

Total number of rows: 1782073

Table truncated, full table size 73874 Kbytes.




Supplementary file Size Download File type/resource
GSM1144440_P5-R4.CEL.gz 26.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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