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Sample GSM1144439 Query DataSets for GSM1144439
Status Public on Jun 04, 2013
Title Primary tumour region 3 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 3
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 3
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.408382511713524
CN_473964 NULL 0.049667121897086
CN_473965 NULL 0.00198935881968144
CN_477984 NULL -0.012580634693157
CN_473981 NULL 0.456534837883121
CN_473982 NULL -0.256892788244796
CN_497980 NULL 0.131957807300498
CN_497981 NULL 0.0976006571025676
CN_513369 NULL -0.47659398776004
CN_513370 NULL 0.0425389332391796
CN_517762 NULL 0.152806170101642
CN_517763 NULL -0.242344561393658
CN_502615 NULL 0.521350035535962
CN_502613 NULL -0.673578422035635
CN_502614 NULL 0.183178959212252
CN_502616 NULL 0.271929153689255
CN_502842 NULL -0.20478574475998
CN_502843 NULL -0.382600872940402
CN_466171 NULL 0.0522877728307808
CN_466172 NULL -0.161715862392112

Total number of rows: 1782073

Table truncated, full table size 73867 Kbytes.

Supplementary file Size Download File type/resource
GSM1144439_P5-R3.CEL.gz 26.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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