GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1144438 Query DataSets for GSM1144438
Status Public on Jun 04, 2013
Title Primary tumour region 2 P5
Sample type genomic
Source name kidney
Organism Homo sapiens
Characteristics tissue: Primary tumour
tissue section: region 2
subject: P5
disease state: clear cell Renal Cell Carinoma
batch: 1
Treatment protocol Patients P5, P6 and P7 underwent 6 weeks of Everolimus pre-treatment before a week wash-out followed by nephrectomy. All 5 other patients were untreated.
Extracted molecule genomic DNA
Extraction protocol Fresh frozen
Label biotin
Label protocol standard Affymetrix protocol
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description clear cell Renal Cell Carinoma, region 2
Data processing B Allele Frequencies and logRs were obtained using the aroma R package.
B Allele Frequencies: estimated ratio of allele B against allele A; logR: logarithmic ratio of DNA content against expectations.
Submission date May 18, 2013
Last update date Jun 05, 2013
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
Platform ID GPL6801
Series (1)
GSE47077 Multi-region copy-number analysis

Data table header descriptions
VALUE B Allele Frequencies

Data table
CN_473963 NULL 0.567784319124477
CN_473964 NULL -0.2057522250612
CN_473965 NULL 0.218085654046691
CN_477984 NULL 0.217555129687088
CN_473981 NULL 0.168779525769399
CN_473982 NULL 0.235172384759051
CN_497980 NULL 0.212412281067128
CN_497981 NULL -0.082766236686463
CN_513369 NULL -0.623481397463153
CN_513370 NULL 0.113171284294158
CN_517762 NULL 0.133102880629495
CN_517763 NULL -0.232183987220622
CN_502615 NULL 0.664428236398356
CN_502613 NULL -0.700621340810441
CN_502614 NULL -0.0667582692457171
CN_502616 NULL 0.721031197401921
CN_502842 NULL -0.104971540136048
CN_502843 NULL 0.219995274746853
CN_466171 NULL -0.100779822550957
CN_466172 NULL -0.271236092864743

Total number of rows: 1782073

Table truncated, full table size 73780 Kbytes.

Supplementary file Size Download File type/resource
GSM1144438_P5-R2.CEL.gz 26.6 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap