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Sample GSM113943 Query DataSets for GSM113943
Status Public on Aug 24, 2007
Title Normal primary thyroid cells, thyroid #5, IFN-gamma treatment
Sample type RNA
Source name thyroid
Organism Homo sapiens
Characteristics Normal primary thyroid cells, IFN-gamma treatment
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Normal primary thyroid cells, thyroid #5, IFN-gamma treatment
Data processing Ann Arbor quantile-normalized trimmed-mean method
Submission date Jun 12, 2006
Last update date Aug 24, 2007
Contact name Rork Kuick
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
Platform ID GPL571
Series (1)
GSE5054 Effect of INF-gamma and IL1-beta on thyroid cells

Data table header descriptions
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
201963_at 3.16879202
207275_s_at 2.779596491
202912_at 3.752048448
205013_s_at 2.257678575
206513_at 2.848804701
205568_at 2.152288344
205870_at 2.294466226
202357_s_at 3.299725154
207571_x_at 2.902002891
210785_s_at 2.960946196
221245_s_at 3.166430114
220066_at 1.897627091
205467_at 2.498310554
209310_s_at 2.602059991
1405_i_at 2.093421685
204655_at 2.204119983
208075_s_at 2.678518379
214038_at 2.252853031
205692_s_at 2.814913181
204440_at 2.378397901

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM113943.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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