GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM113941 Query DataSets for GSM113941
Status Public on Aug 24, 2007
Title Normal primary thyroid cells, thyroid #4, combined IFN-gamma and IL1-beta treatment
Sample type RNA
Source name thyroid
Organism Homo sapiens
Characteristics Normal primary thyroid cells, combined IFN-gamma and IL1-beta treatment
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
Label biotin
Label protocol 5 µg of total RNA was processed to produce biotinylated cRNA targets.
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description Normal primary thyroid cells, thyroid #4, combined IFN-gamma and IL1-beta treatment
Data processing Ann Arbor quantile-normalized trimmed-mean method
Submission date Jun 12, 2006
Last update date Aug 24, 2007
Contact name Rork Kuick
Phone 734-936-9241
Organization name University of Michigan
Street address University of Michigan, SPH II, 1415 Washington Heights, Room M2533
City Ann Arbor
State/province MI
ZIP/Postal code 48109-2029
Country USA
Platform ID GPL571
Series (1)
GSE5054 Effect of INF-gamma and IL1-beta on thyroid cells

Data table header descriptions
VALUE quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms

Data table
201963_at 3.765072201
207275_s_at 3.576226137
202912_at 4.195595263
205013_s_at 3.013679697
206513_at 3.071882007
205568_at 3.22762965
205870_at 2.558708571
202357_s_at 4.481772166
207571_x_at 3.29578694
210785_s_at 3.33405144
221245_s_at 3.776919003
220066_at 3.25163822
205467_at 2.666517981
209310_s_at 2.921686475
1405_i_at 4.302460808
204655_at 4.339411687
208075_s_at 3.909395546
214038_at 4.318730967
205692_s_at 3.868879446
204440_at 3.58546073

Total number of rows: 22277

Table truncated, full table size 495 Kbytes.

Supplementary file Size Download File type/resource
GSM113941.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap