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Sample GSM1139402 Query DataSets for GSM1139402
Status Public on May 13, 2013
Title A6122 iPSC / iGP91-02
Sample type genomic
Source name X-CGD iPSC derived from reprogrammed CD34+ cells
Organism Homo sapiens
Characteristics cell type: iPSC
Treatment protocol untreated media
Growth protocol Hematopoietic Stem Cell media, iPSC media
Extracted molecule genomic DNA
Extraction protocol QIAamp DNA Mini Kit was used for genomic DNA purification,500 ng of genomic DNA (picoGreen-quantified) was bisulfite-converted (EZ DNA methylation kit; Zymo Research)
Label Cy5 and Cy3
Label protocol Illumina infinium assay
Hybridization protocol Illumina infinium assay
Scan protocol Illumina HiScan-SQ
Description 6164655163_R01C01
Data processing GenomeStudio version 2011.1, exported Beta values without backround subtraction or normalization.
Submission date May 13, 2013
Last update date May 13, 2013
Contact name Timothy G Myers
Organization name National Institute of Allergy and Infectious Diseases
Department Research Technologies Branch
Lab Genomic Technologies Section
Street address 50 South Drive, Room 5509
City Bethesda
State/province MD
ZIP/Postal code 20892-8005
Country USA
Platform ID GPL13534
Series (1)
GSE40790 Transgene-free iPSCs generated from small volume peripheral blood nonmobilized CD34+ cells

Data table header descriptions
VALUE Average Beta
Detection Pval

Data table
ID_REF VALUE Detection Pval
cg00000029 0.6722717 0
cg00000108 0.9200267 0
cg00000109 0.8819152 0
cg00000165 0.1014085 0
cg00000236 0.7824126 0
cg00000289 0.5747817 0
cg00000292 0.847535 0
cg00000321 0.3146708 0
cg00000363 0.1199693 0
cg00000622 0.01564502 0
cg00000658 0.8198627 0
cg00000714 0.2466154 0
cg00000721 0.8814896 0
cg00000734 0.05936887 0
cg00000769 0.05626016 0
cg00000807 0.7423241 0
cg00000884 0.8157606 0
cg00000905 0.1902871 0
cg00000924 0.5368853 0
cg00000948 0.838955 0

Total number of rows: 485577

Table truncated, full table size 10985 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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