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Sample GSM1133601 Query DataSets for GSM1133601
Status Public on May 07, 2013
Title OA_SF_individual2
Sample type genomic
 
Source name Osteoarthritis Synovial Fibroblast
Organism Homo sapiens
Characteristics cell type: Synovial Fibroblast
diagnosis: Osteoarthritis
Treatment protocol no treatment
Growth protocol Fibroblast cultures were maintained in Dulbecco's modified Eagle's medium supplemented with 10% fetal calf serum
Extracted molecule genomic DNA
Extraction protocol Proteinase K extraction
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450k Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader (Illumina HiSeq2000) using standard recommended Illumina scanner setting
Description Osteoarthritis Synovial Fibroblast
Data processing Regular BeadStudio processing
 
Submission date May 06, 2013
Last update date May 07, 2013
Contact name Esteban Ballestar
Organization name Josep Carreras Research Institute (IJC)
Lab Epigenetics and Immune Disease
Street address Ctra de Can Ruti, Camí de les Escoles s/n
City Badalona, Barcelona
State/province N/A = Not Applicable
ZIP/Postal code 08916
Country Spain
 
Platform ID GPL13534
Series (1)
GSE46650 Identification of novel markers in rheumatoid arthritis through integrated analysis of DNA methylation and microRNA expression

Data table header descriptions
ID_REF
VALUE normalized Average Beta
OA2.Detection Pval

Data table
ID_REF VALUE OA2.Detection Pval
cg00000029 0.4142585 0
cg00000108 0.7430072 0
cg00000109 0.6171403 0
cg00000165 0.2992234 0
cg00000236 0.8174911 0
cg00000289 0.6518545 0
cg00000292 0.55453 0
cg00000321 1
cg00000363 0.224415 0
cg00000622 0.03932259 0
cg00000658 0.8209369 0
cg00000714 0.1404465 0
cg00000721 0.8975466 0
cg00000734 0.1036905 0
cg00000769 0.1002207 0
cg00000807 0.8401378 0
cg00000884 0.7823542 0
cg00000905 0.1667272 0
cg00000924 0.5219592 0
cg00000948 0.8516354 0

Total number of rows: 485577

Table truncated, full table size 10941 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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