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Sample GSM1128512 Query DataSets for GSM1128512
Status Public on Jan 06, 2014
Title NT2_2010047.1_4R05C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cancer
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g3
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6100181
cg08255233 0.5896692
cg12256311 0.2396044
cg14094460 0.3750748
cg03956243 0.5513776
cg05910615 0.1078903
ch.5.87268879R 0.2649539
cg03144560 0.3417199
cg18803079 0.5226799
cg24108215 0.6695538
cg08365438 0.6280737
cg08882650 0.2702866
cg02449698 0.4483337
cg22177976 0.6592263
cg15092368 0.607183
cg22918356 0.5535066
cg22805491 0.5173781
cg10651637 0.3149242
cg03837726 0.5407836
cg07213548 0.6299632

Total number of rows: 454213

Table truncated, full table size 9390 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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