GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1128511 Query DataSets for GSM1128511
Status Public on Jan 06, 2014
Title NT2_2010043.1_4R04C01
Sample type genomic
Source name cervix
Organism Homo sapiens
Characteristics tissue: cervix
Sex: female
disease status: cancer
hpv status: positive
Extracted molecule genomic DNA
Extraction protocol DNA was extracted on the BioRobot EZ1 (Qiagen, Hilden, Germany)
Label Cy5 and Cy3
Label protocol According to Illumina Infinium Human 450K methylation kit procedures.
Hybridization protocol According to Illumina Infinium Human 450K methylation kit procedures.
Scan protocol iScan scanner was used according to manufacturers protocol.
Description g3
Data processing Normalization control and backgroud subtraction in BeadStudio V2. Beta-value between 0 and 1 generated from unmethylated and methylated signal intensities
Submission date Apr 23, 2013
Last update date Jan 06, 2014
Contact name Sanja A Farkas
Organization name Örebro University hospital
Department Laboratory medicine
Street address Södra rosen grevsgatan
City Örebro
ZIP/Postal code 701 85
Country Sweden
Platform ID GPL13534
Series (1)
GSE46306 Genome-wide DNA methylation in cervical tissue

Data table header descriptions
VALUE Average beta values were arcsine square root transformed.

Data table
cg09182724 0.6701562
cg08255233 0.6130815
cg12256311 0.2879491
cg14094460 0.533995
cg03956243 0.5352796
cg05910615 0.1184425
ch.5.87268879R 0.3311291
cg03144560 0.333365
cg18803079 0.536174
cg24108215 0.6330326
cg08365438 0.6268339
cg08882650 0.3407086
cg02449698 0.4719082
cg22177976 0.8411903
cg15092368 0.5901176
cg22918356 0.4867974
cg22805491 0.4488079
cg10651637 0.3673591
cg03837726 0.521449
cg07213548 0.5325412

Total number of rows: 454213

Table truncated, full table size 9403 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap